NP-MRD: Showing NP-Card for Pyrronamycin B (NP0003208)

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Record Information

Version

1.0

Created at

2020-12-09 00:31:53 UTC

Updated at

2021-07-15 16:45:48 UTC

NP-MRD ID

NP0003208

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pyrronamycin B

Provided By

NPAtlas

Description

Pyrronamycin B is found in Streptomyces sp. It was first documented in 2000 (PMID: 10724011). Based on a literature review very few articles have been published on N-(6-amino-1-oxohex-4-en-2-yl)-3-cyano-3-{[4-(4-{[1-hydroxy-2-(N'-hydroxycarbamimidamido)ethylidene]amino}-1H-pyrrole-2-amido)-1H-pyrrol-2-yl]formamido}propanimidic acid.

Structure

MOL 3D MOL SDF 3D SDF PDB SMILES InChI


  Mrv1652306242117463D          

 69 70  0  0  0  0            999 V2000
    5.3216   -0.1915    3.8433 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6975   -0.8454    3.1210 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9053   -1.6612    2.1759 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7652   -2.4416    1.2457 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6594   -1.6171    0.4297 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6035   -0.3554    0.6048 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5722   -2.0886   -0.5250 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.4331   -1.1924   -1.2817 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3307   -1.5107   -2.7118 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6225   -2.4056   -3.1072 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8950   -1.4061   -0.8644 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.7142   -0.4682   -1.6485 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4477    0.4450   -1.0411 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3072    1.4334   -1.7558 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.2308    1.2559   -3.1917 N   0  0  2  0  0  0  0  0  0  0  0  0
    2.8882   -0.9333    1.4951 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5406   -1.0642    1.8828 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2474   -1.8204    2.8381 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4340   -0.3437    1.2097 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.4613    0.5502   -2.0482 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7634    0.6957   -2.5672 N   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.5649    2.4408   -3.1247 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0628    1.3319    3.0728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7498    1.1996    3.2748 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7235    0.8675   -0.2194 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4895    0.4139    0.1088 N   0  0  0  0  0  0  0  0  0  0  0  0
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   10.4335    0.4955    0.0509 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3510    1.3370   -1.3821 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9595    2.4495   -1.5128 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1511    1.0850   -3.6220 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7933    2.0996   -3.6245 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1329   -0.3024    0.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2534   -0.9076    2.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -13.1908    1.6447   -2.6022 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
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  4  5  1  0  0  0  0
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  3 16  1  0  0  0  0
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 11 47  1  0  0  0  0
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 40 69  1  0  0  0  0
M  END

     RDKit          3D

 69 70  0  0  0  0  0  0  0  0999 V2000
    5.3216   -0.1915    3.8433 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6975   -0.8454    3.1210 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9053   -1.6612    2.1759 C   0  0  2  0  0  0  0  0  0  0  0  0
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 40 69  1  0
M  END


  Mrv1652306242117463D          

 69 70  0  0  0  0            999 V2000
    5.3216   -0.1915    3.8433 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6975   -0.8454    3.1210 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9053   -1.6612    2.1759 C   0  0  2  0  0  0  0  0  0  0  0  0
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 40 69  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0003208

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]ON([H])C(=N/C([H])([H])C(=O)N([H])C1=C([H])N([H])C(=C1[H])C(=O)N([H])C1=C([H])N([H])C(=C1[H])C(=O)N([H])[C@]([H])(C#N)C([H])([H])C(=O)N([H])[C@]([H])(C([H])=O)C([H])([H])C(\[H])=C(/[H])C([H])([H])N([H])[H])\N([H])[H]

> <INCHI_IDENTIFIER>
InChI=1S/C23H29N11O6/c24-4-2-1-3-13(12-35)30-19(36)7-14(8-25)32-21(38)18-6-16(10-28-18)33-22(39)17-5-15(9-27-17)31-20(37)11-29-23(26)34-40/h1-2,5-6,9-10,12-14,27-28,40H,3-4,7,11,24H2,(H,30,36)(H,31,37)(H,32,38)(H,33,39)(H3,26,29,34)/b2-1+/t13-,14-/m0/s1

> <INCHI_KEY>
FPNMIDOXWDOTHZ-OWOJBTEDSA-N

> <FORMULA>
C23H29N11O6

> <MOLECULAR_WEIGHT>
555.556

> <EXACT_MASS>
555.230227698

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
57.613513502982414

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
10

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4-{2-[(Z)-[amino(hydroxyamino)methylidene]amino]acetamido}-N-(5-{[(1S)-2-{[(2S,4E)-6-amino-1-oxohex-4-en-2-yl]carbamoyl}-1-cyanoethyl]carbamoyl}-1H-pyrrol-3-yl)-1H-pyrrole-2-carboxamide

> <ALOGPS_LOGP>
0.00

> <JCHEM_LOGP>
-3.443420126333333

> <ALOGPS_LOGS>
-3.66

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA>
12.507432952502423

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.786932768607437

> <JCHEM_PKA_STRONGEST_BASIC>
9.533437848957144

> <JCHEM_POLAR_SURFACE_AREA>
285.5

> <JCHEM_REFRACTIVITY>
155.98109999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.23e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-{2-[(Z)-[amino(hydroxyamino)methylidene]amino]acetamido}-N-(5-{[(1S)-2-{[(2S,4E)-6-amino-1-oxohex-4-en-2-yl]carbamoyl}-1-cyanoethyl]carbamoyl}-1H-pyrrol-3-yl)-1H-pyrrole-2-carboxamide

> <JCHEM_VEBER_RULE>
0

$$$$

     RDKit          3D

 69 70  0  0  0  0  0  0  0  0999 V2000
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 13 14  1  0
 14 15  1  0
  3 16  1  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  2  0
 29 31  1  0
 31 32  1  0
 32 33  2  0
 33 34  1  0
 33 35  1  0
 35 36  1  0
 27 37  2  0
 37 38  1  0
 21 39  2  0
 39 40  1  0
 40 19  1  0
 38 25  1  0
  3 41  1  1
  4 42  1  0
  4 43  1  0
  7 44  1  0
  8 45  1  6
  9 46  1  0
 11 47  1  0
 11 48  1  0
 12 49  1  0
 13 50  1  0
 14 51  1  0
 14 52  1  0
 15 53  1  0
 15 54  1  0
 16 55  1  0
 20 56  1  0
 22 57  1  0
 26 58  1  0
 28 59  1  0
 31 60  1  0
 31 61  1  0
 34 62  1  0
 34 63  1  0
 35 64  1  0
 36 65  1  0
 37 66  1  0
 38 67  1  0
 39 68  1  0
 40 69  1  0
M  END

HEADER    PROTEIN                                 24-JUN-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-JUN-21         0                                  
HETATM    1  N   UNK     0       5.322  -0.192   3.843  0.00  0.00           N+0
HETATM    2  C   UNK     0       4.697  -0.845   3.121  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.905  -1.661   2.176  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.765  -2.442   1.246  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.659  -1.617   0.430  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.604  -0.355   0.605  0.00  0.00           O+0
HETATM    7  N   UNK     0       6.572  -2.089  -0.525  0.00  0.00           N+0
HETATM    8  C   UNK     0       7.433  -1.192  -1.282  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.331  -1.511  -2.712  0.00  0.00           C+0
HETATM   10  O   UNK     0       6.622  -2.406  -3.107  0.00  0.00           O+0
HETATM   11  C   UNK     0       8.895  -1.406  -0.864  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.714  -0.468  -1.649  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.448   0.445  -1.041  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.307   1.433  -1.756  0.00  0.00           C+0
HETATM   15  N   UNK     0      11.231   1.256  -3.192  0.00  0.00           N+0
HETATM   16  N   UNK     0       2.888  -0.933   1.495  0.00  0.00           N+0
HETATM   17  C   UNK     0       1.541  -1.064   1.883  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.247  -1.820   2.838  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.434  -0.344   1.210  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.890  -0.362   1.590  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.619   0.389   0.706  0.00  0.00           C+0
HETATM   22  N   UNK     0      -3.048   0.629   0.779  0.00  0.00           N+0
HETATM   23  C   UNK     0      -3.692   0.629   2.030  0.00  0.00           C+0
HETATM   24  O   UNK     0      -3.025   0.446   3.070  0.00  0.00           O+0
HETATM   25  C   UNK     0      -5.126   0.841   2.146  0.00  0.00           C+0
HETATM   26  C   UNK     0      -6.084   0.741   1.187  0.00  0.00           C+0
HETATM   27  C   UNK     0      -7.356   1.044   1.728  0.00  0.00           C+0
HETATM   28  N   UNK     0      -8.560   0.937   1.086  0.00  0.00           N+0
HETATM   29  C   UNK     0      -9.735   0.833   0.460  0.00  0.00           C+0
HETATM   30  O   UNK     0     -10.717   1.654   0.523  0.00  0.00           O+0
HETATM   31  C   UNK     0     -10.022  -0.359  -0.445  0.00  0.00           C+0
HETATM   32  N   UNK     0     -11.329  -0.198  -0.986  0.00  0.00           N+0
HETATM   33  C   UNK     0     -11.461   0.550  -2.048  0.00  0.00           C+0
HETATM   34  N   UNK     0     -12.763   0.696  -2.567  0.00  0.00           N+0
HETATM   35  N   UNK     0     -10.349   1.192  -2.653  0.00  0.00           N+0
HETATM   36  O   UNK     0     -10.565   2.441  -3.125  0.00  0.00           O+0
HETATM   37  C   UNK     0      -7.063   1.332   3.073  0.00  0.00           C+0
HETATM   38  N   UNK     0      -5.750   1.200   3.275  0.00  0.00           N+0
HETATM   39  C   UNK     0      -0.724   0.868  -0.219  0.00  0.00           C+0
HETATM   40  N   UNK     0       0.490   0.414   0.109  0.00  0.00           N+0
HETATM   41  H   UNK     0       3.413  -2.416   2.874  0.00  0.00           H+0
HETATM   42  H   UNK     0       4.056  -2.947   0.523  0.00  0.00           H+0
HETATM   43  H   UNK     0       5.271  -3.267   1.785  0.00  0.00           H+0
HETATM   44  H   UNK     0       6.643  -3.114  -0.712  0.00  0.00           H+0
HETATM   45  H   UNK     0       7.223  -0.139  -1.015  0.00  0.00           H+0
HETATM   46  H   UNK     0       7.894  -0.940  -3.428  0.00  0.00           H+0
HETATM   47  H   UNK     0       9.196  -2.442  -1.191  0.00  0.00           H+0
HETATM   48  H   UNK     0       9.019  -1.312   0.234  0.00  0.00           H+0
HETATM   49  H   UNK     0       9.725  -0.521  -2.715  0.00  0.00           H+0
HETATM   50  H   UNK     0      10.434   0.496   0.051  0.00  0.00           H+0
HETATM   51  H   UNK     0      12.351   1.337  -1.382  0.00  0.00           H+0
HETATM   52  H   UNK     0      10.960   2.450  -1.513  0.00  0.00           H+0
HETATM   53  H   UNK     0      12.151   1.085  -3.622  0.00  0.00           H+0
HETATM   54  H   UNK     0      10.793   2.100  -3.624  0.00  0.00           H+0
HETATM   55  H   UNK     0       3.133  -0.302   0.710  0.00  0.00           H+0
HETATM   56  H   UNK     0      -1.253  -0.908   2.461  0.00  0.00           H+0
HETATM   57  H   UNK     0      -3.603   0.801  -0.082  0.00  0.00           H+0
HETATM   58  H   UNK     0      -5.942   0.471   0.151  0.00  0.00           H+0
HETATM   59  H   UNK     0      -8.915   2.188   1.538  0.00  0.00           H+0
HETATM   60  H   UNK     0     -10.003  -1.280   0.207  0.00  0.00           H+0
HETATM   61  H   UNK     0      -9.211  -0.448  -1.179  0.00  0.00           H+0
HETATM   62  H   UNK     0     -13.191   1.645  -2.602  0.00  0.00           H+0
HETATM   63  H   UNK     0     -13.273  -0.168  -2.907  0.00  0.00           H+0
HETATM   64  H   UNK     0      -9.400   0.788  -2.759  0.00  0.00           H+0
HETATM   65  H   UNK     0     -10.971   3.030  -2.465  0.00  0.00           H+0
HETATM   66  H   UNK     0      -7.802   1.614   3.821  0.00  0.00           H+0
HETATM   67  H   UNK     0      -5.317   1.366   4.213  0.00  0.00           H+0
HETATM   68  H   UNK     0      -1.000   1.512  -1.069  0.00  0.00           H+0
HETATM   69  H   UNK     0       1.389   0.620  -0.431  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   16   41                                             
CONECT    4    3    5   42   43                                             
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   44                                                  
CONECT    8    7    9   11   45                                             
CONECT    9    8   10   46                                                  
CONECT   10    9                                                            
CONECT   11    8   12   47   48                                             
CONECT   12   11   13   49                                                  
CONECT   13   12   14   50                                                  
CONECT   14   13   15   51   52                                             
CONECT   15   14   53   54                                                  
CONECT   16    3   17   55                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   40                                                  
CONECT   20   19   21   56                                                  
CONECT   21   20   22   39                                                  
CONECT   22   21   23   57                                                  
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   38                                                  
CONECT   26   25   27   58                                                  
CONECT   27   26   28   37                                                  
CONECT   28   27   29   59                                                  
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   60   61                                             
CONECT   32   31   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33   62   63                                                  
CONECT   35   33   36   64                                                  
CONECT   36   35   65                                                       
CONECT   37   27   38   66                                                  
CONECT   38   37   25   67                                                  
CONECT   39   21   40   68                                                  
CONECT   40   39   19   69                                                  
CONECT   41    3                                                            
CONECT   42    4                                                            
CONECT   43    4                                                            
CONECT   44    7                                                            
CONECT   45    8                                                            
CONECT   46    9                                                            
CONECT   47   11                                                            
CONECT   48   11                                                            
CONECT   49   12                                                            
CONECT   50   13                                                            
CONECT   51   14                                                            
CONECT   52   14                                                            
CONECT   53   15                                                            
CONECT   54   15                                                            
CONECT   55   16                                                            
CONECT   56   20                                                            
CONECT   57   22                                                            
CONECT   58   26                                                            
CONECT   59   28                                                            
CONECT   60   31                                                            
CONECT   61   31                                                            
CONECT   62   34                                                            
CONECT   63   34                                                            
CONECT   64   35                                                            
CONECT   65   36                                                            
CONECT   66   37                                                            
CONECT   67   38                                                            
CONECT   68   39                                                            
CONECT   69   40                                                            
MASTER        0    0    0    0    0    0    0    0   69    0  140    0
END

RDKit          3D

69 70  0  0  0  0  0  0  0  0999 V2000
    5.3216   -0.1915    3.8433 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.6975   -0.8454    3.1210 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9053   -1.6612    2.1759 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7652   -2.4416    1.2457 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6594   -1.6171    0.4297 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6035   -0.3554    0.6048 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5722   -2.0886   -0.5250 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.4331   -1.1924   -1.2817 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3307   -1.5107   -2.7118 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6225   -2.4056   -3.1072 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8950   -1.4061   -0.8644 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7142   -0.4682   -1.6485 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4477    0.4450   -1.0411 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3072    1.4334   -1.7558 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2308    1.2559   -3.1917 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8882   -0.9333    1.4951 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5406   -1.0642    1.8828 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2474   -1.8204    2.8381 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4340   -0.3437    1.2097 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8901   -0.3618    1.5901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6189    0.3892    0.7058 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0478    0.6288    0.7794 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6915    0.6294    2.0301 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0246    0.4464    3.0700 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1264    0.8408    2.1455 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0838    0.7412    1.1865 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3560    1.0445    1.7282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5596    0.9368    1.0864 N   0  0  0  0  0  0  0  0  0  0  0  0
   -9.7348    0.8325    0.4603 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7166    1.6539    0.5226 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0222   -0.3592   -0.4447 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3286   -0.1984   -0.9859 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4613    0.5502   -2.0482 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.7634    0.6957   -2.5672 N   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3492    1.1918   -2.6531 N   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5649    2.4408   -3.1247 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0628    1.3319    3.0728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7498    1.1996    3.2748 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7235    0.8675   -0.2194 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4895    0.4139    0.1088 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4134   -2.4160    2.8739 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0563   -2.9471    0.5232 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2705   -3.2673    1.7850 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6429   -3.1138   -0.7118 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2235   -0.1388   -1.0147 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8944   -0.9402   -3.4282 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1964   -2.4417   -1.1907 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0192   -1.3124    0.2337 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7252   -0.5213   -2.7146 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.4335    0.4955    0.0509 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.3510    1.3370   -1.3821 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9595    2.4495   -1.5128 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1511    1.0850   -3.6220 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.7933    2.0996   -3.6245 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1329   -0.3024    0.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2534   -0.9076    2.4608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6030    0.8011   -0.0820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9425    0.4706    0.1511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9154    2.1880    1.5376 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0030   -1.2804    0.2066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2109   -0.4478   -1.1789 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.1908    1.6447   -2.6022 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.2730   -0.1677   -2.9066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4002    0.7881   -2.7586 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9707    3.0305   -2.4648 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8023    1.6138    3.8206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3166    1.3660    4.2132 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9997    1.5115   -1.0695 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3887    0.6195   -0.4313 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  8 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
  3 16  1  0
 16 17  1  0
 17 18  2  0
 17 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 23 24  2  0
 23 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  1  0
 28 29  1  0
 29 30  2  0
 29 31  1  0
 31 32  1  0
 32 33  2  0
 33 34  1  0
 33 35  1  0
 35 36  1  0
 27 37  2  0
 37 38  1  0
 21 39  2  0
 39 40  1  0
 40 19  1  0
 38 25  1  0
  3 41  1  1
  4 42  1  0
  4 43  1  0
  7 44  1  0
  8 45  1  6
  9 46  1  0
 11 47  1  0
 11 48  1  0
 12 49  1  0
 13 50  1  0
 14 51  1  0
 14 52  1  0
 15 53  1  0
 15 54  1  0
 16 55  1  0
 20 56  1  0
 22 57  1  0
 26 58  1  0
 28 59  1  0
 31 60  1  0
 31 61  1  0
 34 62  1  0
 34 63  1  0
 35 64  1  0
 36 65  1  0
 37 66  1  0
 38 67  1  0
 39 68  1  0
 40 69  1  0
M  END

View in JSmol View NMR Assignments

Synonyms

Value	Source
N-(6-Amino-1-oxohex-4-en-2-yl)-3-cyano-3-{[4-(4-{[1-hydroxy-2-(n'-hydroxycarbamimidamido)ethylidene]amino}-1H-pyrrole-2-amido)-1H-pyrrol-2-yl]formamido}propanimidate	Generator

Chemical Formula

C₂₃H₂₉N₁₁O₆

Average Mass

555.5560 Da

Monoisotopic Mass

555.23023 Da

IUPAC Name

4-{2-[(Z)-[amino(hydroxyamino)methylidene]amino]acetamido}-N-(5-{[(1S)-2-{[(2S,4E)-6-amino-1-oxohex-4-en-2-yl]carbamoyl}-1-cyanoethyl]carbamoyl}-1H-pyrrol-3-yl)-1H-pyrrole-2-carboxamide

Traditional Name

4-{2-[(Z)-[amino(hydroxyamino)methylidene]amino]acetamido}-N-(5-{[(1S)-2-{[(2S,4E)-6-amino-1-oxohex-4-en-2-yl]carbamoyl}-1-cyanoethyl]carbamoyl}-1H-pyrrol-3-yl)-1H-pyrrole-2-carboxamide

CAS Registry Number

Not Available

SMILES

NC\C=C\CC(NC(=O)CC(NC(=O)C1=CC(NC(=O)C2=CC(NC(=O)CN=C(N)NO)=CN2)=CN1)C#N)C=O

InChI Identifier

InChI=1S/C23H29N11O6/c24-4-2-1-3-13(12-35)30-19(36)7-14(8-25)32-21(38)18-6-16(10-28-18)33-22(39)17-5-15(9-27-17)31-20(37)11-29-23(26)34-40/h1-2,5-6,9-10,12-14,27-28,40H,3-4,7,11,24H2,(H,30,36)(H,31,37)(H,32,38)(H,33,39)(H3,26,29,34)/b2-1+

InChI Key

FPNMIDOXWDOTHZ-OWOJBTEDSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces sp.	NPAtlas	10724011

Species Where Detected

Species Name	Source	Reference
Streptomyces sp. KY11768	KNApSAcK Database	22123792

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0	ALOGPS
logP	-3.4	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	11.79	ChemAxon
pKa (Strongest Basic)	9.53	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	10	ChemAxon
Polar Surface Area	285.5 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	155.98 m³·mol⁻¹	ChemAxon
Polarizability	57.61 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

NPAtlas ID

NPA007224

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8004863

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

9829126

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Asai A, Sakai Y, Ogawa H, Yamashita Y, Kakita S, Ochiai K, Ashizawa T, Mihara A, Mizukami T, Nakano H: Pyrronamycin A and B, novel antitumor antibiotics containing pyrrole-amide repeating unit, produced by Streptomyces sp. J Antibiot (Tokyo). 2000 Jan;53(1):66-9. doi: 10.7164/antibiotics.53.66. [PubMed:10724011 ]

Showing NP-Card for Pyrronamycin B (NP0003208)

MOL for NP0003208 (Pyrronamycin B)

3D MOL for NP0003208 (Pyrronamycin B)

3D SDF for NP0003208 (Pyrronamycin B)

3D-SDF for NP0003208 (Pyrronamycin B)

PDB for NP0003208 (Pyrronamycin B)

3D PDB for NP0003208 (Pyrronamycin B)

SMILES for NP0003208 (Pyrronamycin B)

INCHI for NP0003208 (Pyrronamycin B)

Structure for NP0003208 (Pyrronamycin B)

3D Structure for NP0003208 (Pyrronamycin B)