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Record Information
Version1.0
Created at2020-12-09 00:31:11 UTC
Updated at2021-07-15 16:45:37 UTC
NP-MRD IDNP0003141
Secondary Accession NumbersNone
Natural Product Identification
Common NameTylopeptin B
Provided ByNPAtlasNPAtlas Logo
Description Tylopeptin B is found in Tylopilus neofelleus. It was first documented in 1999 (PMID: 10656572). Based on a literature review very few articles have been published on (2S)-2-[(2-{[(2S)-2-{[(2S)-2-[(2-{[(2S)-1,3-dihydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2S)-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2S)-1-hydroxy-2-[(1-hydroxyethylidene)amino]-3-(1H-indol-3-yl)propylidene]amino}-3-methylbutylidene]amino}-2-methylpropylidene)amino]-2-methylpropylidene}amino)propylidene]amino}-4-(C-hydroxycarbonimidoyl)butylidene]amino}propylidene]amino}-2-methylpropylidene)amino]propylidene]amino}-1-hydroxy-2-methylpropylidene)amino]-1-hydroxypropylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-2-methylpropylidene)amino]-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]pentanediimidic acid (PMID: 33640429) (PMID: 22052779) (PMID: 20028397).
Structure
Thumb
Synonyms
ValueSource
(2S)-2-[(2-{[(2S)-2-{[(2S)-2-[(2-{[(2S)-1,3-dihydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2S)-1-hydroxy-2-({1-hydroxy-2-[(1-hydroxy-2-{[(2S)-1-hydroxy-2-{[(2S)-1-hydroxy-2-[(1-hydroxyethylidene)amino]-3-(1H-indol-3-yl)propylidene]amino}-3-methylbutylidene]amino}-2-methylpropylidene)amino]-2-methylpropylidene}amino)propylidene]amino}-4-(C-hydroxycarbonimidoyl)butylidene]amino}propylidene]amino}-2-methylpropylidene)amino]propylidene]amino}-1-hydroxy-2-methylpropylidene)amino]-1-hydroxypropylidene]amino}-1-hydroxy-4-methylpentylidene]amino}-1-hydroxy-2-methylpropylidene)amino]-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]pentanediimidateGenerator
Chemical FormulaNot Available
Average MassNot Available
Monoisotopic MassNot Available
IUPAC Name(2S)-2-{2-[(2S)-2-[(2S)-2-{2-[(2S)-2-{2-[(2S)-2-[(2S)-4-carbamoyl-2-[(2S)-2-(2-{2-[(2S)-2-[(2S)-2-acetamido-3-(1H-indol-3-yl)propanamido]-3-methylbutanamido]-2-methylpropanamido}-2-methylpropanamido)propanamido]butanamido]propanamido]-2-methylpropanamido}-3-hydroxypropanamido]-2-methylpropanamido}propanamido]-4-methylpentanamido]-2-methylpropanamido}-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]pentanediamide
Traditional Name(2S)-2-{2-[(2S)-2-[(2S)-2-{2-[(2S)-2-{2-[(2S)-2-[(2S)-4-carbamoyl-2-[(2S)-2-(2-{2-[(2S)-2-[(2S)-2-acetamido-3-(1H-indol-3-yl)propanamido]-3-methylbutanamido]-2-methylpropanamido}-2-methylpropanamido)propanamido]butanamido]propanamido]-2-methylpropanamido}-3-hydroxypropanamido]-2-methylpropanamido}propanamido]-4-methylpentanamido]-2-methylpropanamido}-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]pentanediamide
CAS Registry NumberNot Available
SMILES
CC(C)C[C@@H](CO)NC(=O)[C@H](CCC(N)=O)NC(=O)C(C)(C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)C(C)(C)NC(=O)[C@H](CO)NC(=O)C(C)(C)NC(=O)[C@H](C)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](C)NC(=O)C(C)(C)NC(=O)C(C)(C)NC(=O)[C@@H](NC(=O)[C@H](CC1=CNC2=C1C=CC=C2)NC(C)=O)C(C)C
InChI Identifier
InChI=1S/C72H118N18O19/c1-35(2)29-43(33-91)80-58(100)47(26-28-52(74)95)83-65(107)70(15,16)87-60(102)48(30-36(3)4)82-55(97)39(8)77-63(105)68(11,12)88-61(103)50(34-92)84-66(108)69(13,14)86-56(98)40(9)76-57(99)46(25-27-51(73)94)81-54(96)38(7)78-64(106)71(17,18)90-67(109)72(19,20)89-62(104)53(37(5)6)85-59(101)49(79-41(10)93)31-42-32-75-45-24-22-21-23-44(42)45/h21-24,32,35-40,43,46-50,53,75,91-92H,25-31,33-34H2,1-20H3,(H2,73,94)(H2,74,95)(H,76,99)(H,77,105)(H,78,106)(H,79,93)(H,80,100)(H,81,96)(H,82,97)(H,83,107)(H,84,108)(H,85,101)(H,86,98)(H,87,102)(H,88,103)(H,89,104)(H,90,109)/t38-,39-,40-,43-,46-,47-,48-,49-,50-,53-/m0/s1
InChI KeyKAKBBMJKOKAIHQ-LPVJTGJPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Tylopilus neofelleusNPAtlas
Chemical Taxonomy
ClassificationNot classified
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-4.6ChemAxon
pKa (Strongest Acidic)11.32ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count19ChemAxon
Hydrogen Donor Count20ChemAxon
Polar Surface Area578.93 ŲChemAxon
Rotatable Bond Count44ChemAxon
Refractivity394.62 m³·mol⁻¹ChemAxon
Polarizability163.62 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
NPAtlas IDNPA016882
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8617009
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10441590
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Lee SJ, Yun BS, Cho DH, Yoo ID: Tylopeptins A and B, new antibiotic peptides from Tylopilus neofelleus. J Antibiot (Tokyo). 1999 Nov;52(11):998-1006. doi: 10.7164/antibiotics.52.998. [PubMed:10656572 ]
  2. Syryamina VN, Sannikova NE, De Zotti M, Gobbo M, Formaggio F, Dzuba SA: Tylopeptin B peptide antibiotic in lipid membranes at low concentrations: Self-assembling, mutual repulsion and localization. Biochim Biophys Acta Biomembr. 2021 Sep 1;1863(9):183585. doi: 10.1016/j.bbamem.2021.183585. Epub 2021 Feb 25. [PubMed:33640429 ]
  3. Gobbo M, Merli E, Biondi B, Oancea S, Toffoletti A, Formaggio F, Toniolo C: Synthesis and preliminary conformational analysis of TOAC spin-labeled analogues of the medium-length peptaibiotic tylopeptin B. J Pept Sci. 2012 Jan;18(1):37-44. doi: 10.1002/psc.1413. Epub 2011 Nov 2. [PubMed:22052779 ]
  4. Gobbo M, Poloni C, De Zotti M, Peggion C, Biondi B, Ballano G, Formaggio F, Toniolo C: Synthesis, preferred conformation, and membrane activity of medium-length peptaibiotics: tylopeptin B. Chem Biol Drug Des. 2010 Feb;75(2):169-81. doi: 10.1111/j.1747-0285.2009.00920.x. Epub 2009 Dec 17. [PubMed:20028397 ]