Np mrd loader

Record Information
Version1.0
Created at2020-12-07 18:25:11 UTC
Updated at2021-07-15 16:45:25 UTC
NP-MRD IDNP0003069
Secondary Accession NumbersNone
Natural Product Identification
Common NameFutalosine
Provided ByNPAtlasNPAtlas Logo
Description Futalosine is found in Streptomyces. It was first documented in 1999 (PMID: 10576935). Based on a literature review a significant number of articles have been published on futalosine (PMID: 34417567) (PMID: 34143602) (PMID: 34077175) (PMID: 33999605) (PMID: 33415989) (PMID: 30891141).
Structure
Data?1624573715
SynonymsNot Available
Chemical FormulaC19H18N4O7
Average Mass414.3740 Da
Monoisotopic Mass414.11755 Da
IUPAC Name3-{3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-oxo-6,9-dihydro-1H-purin-9-yl)oxolan-2-yl]propanoyl}benzoic acid
Traditional Namefutalosine
CAS Registry NumberNot Available
SMILES
O[C@@H]1[C@@H](CCC(=O)C2=CC(=CC=C2)C(O)=O)O[C@H]([C@@H]1O)N1C=NC2=C1N=CNC2=O
InChI Identifier
InChI=1S/C19H18N4O7/c24-11(9-2-1-3-10(6-9)19(28)29)4-5-12-14(25)15(26)18(30-12)23-8-22-13-16(23)20-7-21-17(13)27/h1-3,6-8,12,14-15,18,25-26H,4-5H2,(H,28,29)(H,20,21,27)/t12-,14-,15-,18-/m1/s1
InChI KeyVEDWXCWBMDQNCV-SCFUHWHPSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
StreptomycesNPAtlas
Chemical Taxonomy
DescriptionThis compound belongs to the class of organic compounds known as 5'-deoxyribonucleosides. These are nucleosides in which the oxygen atom at the 5'position of the ribose moiety has been replaced by another atom. The nucleobases here are limited to purine, pyrimidine, and pyridine derivatives.
KingdomOrganic compounds
Super ClassNucleosides, nucleotides, and analogues
Class5'-deoxyribonucleosides
Sub ClassNot Available
Direct Parent5'-deoxyribonucleosides
Alternative Parents
Substituents
  • 5'-deoxyribonucleoside
  • Alkyl-phenylketone
  • N-glycosyl compound
  • Glycosyl compound
  • Butyrophenone
  • Hypoxanthine
  • 6-oxopurine
  • Imidazopyrimidine
  • Purine
  • Phenylketone
  • Benzoic acid
  • Benzoic acid or derivatives
  • Aryl alkyl ketone
  • Aryl ketone
  • Benzoyl
  • Pyrimidone
  • Monosaccharide
  • Benzenoid
  • N-substituted imidazole
  • Pyrimidine
  • Monocyclic benzene moiety
  • Vinylogous amide
  • Heteroaromatic compound
  • Tetrahydrofuran
  • Imidazole
  • Azole
  • Secondary alcohol
  • 1,2-diol
  • Ketone
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Organic oxygen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Alcohol
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.53ALOGPS
logP-0.37ChemAxon
logS-2.4ALOGPS
pKa (Strongest Acidic)3.91ChemAxon
pKa (Strongest Basic)0.58ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count9ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area163.34 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity101.65 m³·mol⁻¹ChemAxon
Polarizability40.51 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
NPAtlas IDNPA002809
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8539900
KEGG Compound IDC16999
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10364451
PDB IDNot Available
ChEBI ID51310
Good Scents IDNot Available
References
General References
  1. Hosokawa N, Naganawa H, Kasahara T, Hattori S, Hamada M, Takeuchi T, Yamamoto S, Tsuchiya KS, Hori M: Futalosine and its derivatives, new nucleoside analogs. Chem Pharm Bull (Tokyo). 1999 Jul;47(7):1032-4. doi: 10.1248/cpb.47.1032. [PubMed:10576935 ]
  2. Ogasawara Y, Umetsu S, Inahashi Y, Nonaka K, Dairi T: Identification of pulvomycin as an inhibitor of the futalosine pathway. J Antibiot (Tokyo). 2021 Aug 20. pii: 10.1038/s41429-021-00465-8. doi: 10.1038/s41429-021-00465-8. [PubMed:34417567 ]
  3. Manion-Sommerhalter HR, Fedoseyenko D, Joshi S, Begley TP: Menaquinone Biosynthesis: The Mechanism of 5,8-Dihydroxy-2-naphthoate Synthase (MqnD). Biochemistry. 2021 Jun 29;60(25):1947-1951. doi: 10.1021/acs.biochem.1c00257. Epub 2021 Jun 18. [PubMed:34143602 ]
  4. Feng M, Harijan RK, Harris LD, Tyler PC, Frohlich RFG, Brown M, Schramm VL: Aminofutalosine Deaminase in the Menaquinone Pathway of Helicobacter pylori. Biochemistry. 2021 Jun 22;60(24):1933-1946. doi: 10.1021/acs.biochem.1c00215. Epub 2021 Jun 2. [PubMed:34077175 ]
  5. Joshi S, Fedoseyenko D, Sharma V, Nesbit MA, Britt RD, Begley TP: Menaquinone Biosynthesis: New Strategies to Trap Radical Intermediates in the MqnE-Catalyzed Reaction. Biochemistry. 2021 Jun 1;60(21):1642-1646. doi: 10.1021/acs.biochem.1c00181. Epub 2021 May 17. [PubMed:33999605 ]
  6. Novak J, Rimac H, Kandagalla S, Grishina MA, Potemkin VA: Can natural products stop the SARS-CoV-2 virus? A docking and molecular dynamics study of a natural product database. Future Med Chem. 2021 Feb;13(4):363-378. doi: 10.4155/fmc-2020-0248. Epub 2021 Jan 8. [PubMed:33415989 ]
  7. Joshi S, Fedoseyenko D, Mahanta N, Ducati RG, Feng M, Schramm VL, Begley TP: Antibacterial Strategy against H. pylori: Inhibition of the Radical SAM Enzyme MqnE in Menaquinone Biosynthesis. ACS Med Chem Lett. 2019 Feb 15;10(3):363-366. doi: 10.1021/acsmedchemlett.8b00649. eCollection 2019 Mar 14. [PubMed:30891141 ]
  8. Mahanta N, Hicks KA, Naseem S, Zhang Y, Fedoseyenko D, Ealick SE, Begley TP: Menaquinone Biosynthesis: Biochemical and Structural Studies of Chorismate Dehydratase. Biochemistry. 2019 Apr 9;58(14):1837-1840. doi: 10.1021/acs.biochem.9b00105. Epub 2019 Mar 22. [PubMed:30855131 ]
  9. Ogasawara Y, Dairi T: Searching for potent and specific antibiotics against pathogenic Helicobacter and Campylobacter strains. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):409-414. doi: 10.1007/s10295-018-2108-3. Epub 2018 Nov 20. [PubMed:30460507 ]