Record Information |
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Version | 1.0 |
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Created at | 2020-11-23 18:25:03 UTC |
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Updated at | 2021-08-12 19:51:38 UTC |
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NP-MRD ID | NP0002603 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | D-(+)-Xylose |
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Provided By | BMRB |
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Description | Alpha-D-Xylopyranose is also known as α-D-xylopyranose. Alpha-D-Xylopyranose exists in all living organisms, ranging from bacteria to humans. Alpha-D-Xylopyranose is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. D-(+)-Xylose is found in Chlamydomonas reinhardtii, Citrobacter freundii, Primula veris and Prunus avium. It was first documented in 2008 (PMID: 17984079). Based on a literature review a significant number of articles have been published on alpha-D-Xylopyranose (PMID: 33445012) (PMID: 29393398) (PMID: 27474598) (PMID: 26755723). |
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Structure | O[C@@H]1CO[C@H](O)[C@H](O)[C@H]1O InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5+/m1/s1 |
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Synonyms | Value | Source |
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WURCS=2.0/1,1,0/[a212h-1a_1-5]/1/ | ChEBI | a-D-Xylopyranose | Generator | Α-D-xylopyranose | Generator | a-D-Xylose | Generator | Α-D-xylose | Generator |
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Chemical Formula | C5H10O5 |
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Average Mass | 150.1299 Da |
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Monoisotopic Mass | 150.05282 Da |
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IUPAC Name | (2S,3R,4S,5R)-oxane-2,3,4,5-tetrol |
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Traditional Name | α-D-xylose |
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CAS Registry Number | Not Available |
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SMILES | O[C@@H]1CO[C@H](O)[C@H](O)[C@H]1O |
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InChI Identifier | InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5+/m1/s1 |
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InChI Key | SRBFZHDQGSBBOR-LECHCGJUSA-N |
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Experimental Spectra |
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| Spectrum Type | Description | Depositor Email | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, simulated) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, experimental) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Predicted Spectra |
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| Not Available | Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | |
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Chemical Taxonomy |
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Description | This compound belongs to the class of organic compounds known as pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. |
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Kingdom | Organic compounds |
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Super Class | Organic oxygen compounds |
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Class | Organooxygen compounds |
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Sub Class | Carbohydrates and carbohydrate conjugates |
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Direct Parent | Pentoses |
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Alternative Parents | |
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Substituents | - Pentose monosaccharide
- Oxane
- Secondary alcohol
- Hemiacetal
- Oxacycle
- Organoheterocyclic compound
- Polyol
- Hydrocarbon derivative
- Alcohol
- Aliphatic heteromonocyclic compound
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Molecular Framework | Aliphatic heteromonocyclic compounds |
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External Descriptors | |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Ulrich EL, Akutsu H, Doreleijers JF, Harano Y, Ioannidis YE, Lin J, Livny M, Mading S, Maziuk D, Miller Z, Nakatani E, Schulte CF, Tolmie DE, Kent Wenger R, Yao H, Markley JL: BioMagResBank. Nucleic Acids Res. 2008 Jan;36(Database issue):D402-8. doi: 10.1093/nar/gkm957. Epub 2007 Nov 4. [PubMed:17984079 ]
- Kant Bhatia S, Gurav R, Choi YK, Choi TR, Kim HJ, Song HS, Mi Lee S, Lee Park S, Soo Lee H, Kim YG, Ahn J, Yang YH: Bioprospecting of exopolysaccharide from marine Sphingobium yanoikuyae BBL01: Production, characterization, and metal chelation activity. Bioresour Technol. 2021 Mar;324:124674. doi: 10.1016/j.biortech.2021.124674. Epub 2021 Jan 7. [PubMed:33445012 ]
- Zhao D, Ding X, Hou Y, Hou W, Liu L, Xu T, Yang D: Structural characterization, immune regulation and antioxidant activity of a new heteropolysaccharide from Cantharellus cibarius Fr. Int J Mol Med. 2018 May;41(5):2744-2754. doi: 10.3892/ijmm.2018.3450. Epub 2018 Feb 1. [PubMed:29393398 ]
- Ding HH, Cui SW, Goff HD, Chen J, Guo Q, Wang Q: Xyloglucans from flaxseed kernel cell wall: Structural and conformational characterisation. Carbohydr Polym. 2016 Oct 20;151:538-545. doi: 10.1016/j.carbpol.2016.05.094. Epub 2016 May 27. [PubMed:27474598 ]
- Matsuzawa T, Mitsuishi Y, Kameyama A, Yaoi K: Identification of the Gene Encoding Isoprimeverose-producing Oligoxyloglucan Hydrolase in Aspergillus oryzae. J Biol Chem. 2016 Mar 4;291(10):5080-7. doi: 10.1074/jbc.M115.701474. Epub 2016 Jan 11. [PubMed:26755723 ]
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